From raw reads to reproducible results.

Upload raw FASTQ files and run Bulk RNA-seq, scRNA-seq, ChIP-seq, Ribo-seq, and more. Go fully autonomous or stay in the loop. No data yet? Drop in a GEO accession and try it FREE!

Xplore workspace

Autonomous run

Analysis in progress

The pipeline continues even when this tab is closed.

82% complete

Quality control

12 FASTQ files

Read preparation

Adapters resolved

STAR alignment

GRCh38 · 94.2% mapped

Quantification

18,742 genes

DE + plots

Running DESeq2

Mapped reads

94.2%

Healthy

Notifications ready

Email and Telegram reports will include each stage and any failure reason.

Workflow library

Purpose-built for sequencing data.

Clear availability labels tell you what can run today and what is still being developed.

RNAAvailable

Bulk RNA-seq

From read quality and STAR alignment to count matrices, DESeq2 contrasts, and publication-ready plots.

RPFAvailable

Ribo-seq

Ribosome-footprint analysis with adapter and UMI handling, RPF diagnostics, alignment, and differential analysis.

SCPreview

Single-cell

A focused workspace for cell-level exploration and future end-to-end single-cell processing.

+Planned

More workflows

ChIP-seq and variant-analysis workspaces are part of the roadmap—not presented as finished features.

Autonomous, not opaque

Let the pipeline run. Keep the evidence.

Xplore removes pipeline babysitting without hiding what happened along the way.

Quality controlStage 1
Read preparationStage 2
AlignmentStage 3
QuantificationStage 4
DE + plotsStage 5

Autonomous execution

Close the tab. The analysis keeps moving.

Long-running workflows continue on the server, with recorded stage progress and clear failure diagnostics when intervention is needed.

Transparent results

Every stage remains inspectable.

Move from QC through differential analysis with the inputs, outputs, summaries, and reused results visible inside one project.

Reporting

Know when results are ready.

Receive detailed email or Telegram notifications, then open the workspace or skim a generated PDF summary.

About

Built by someone who runs this data too.

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Role / affiliation

A short bio goes here - who you are, why you built Xplore, and what kind of analyses you run day to day.

Contact

Let's talk.

Have a question or want to learn more? Drop us a message and we'll get back to you shortly.

Get started

Start with reads. Finish with evidence.

Create a workspace, bring FASTQ files or a GEO accession, and follow every stage from quality control to interpretable results.

No credit card  ·  FASTQ or GEO input  ·  Transparent stages